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- Ewens1972?: The famous sampling theorem.
- Weir1984?: Defines $\hat{}{\theta}_{w}$, the weighted average $F$-statistic over loci (see Michalakis1996?).
- Slatkin1991?: Shows ${F}_{ST}=\frac{{f}_{0}-{f}_{1}}{1-{f}_{1}}=\frac{{\overline{t}}_{0}-{\overline{t}}_{1}}{{\overline{t}}_{1}}$, where ${f}_{0}$ is probability of IBD for two alleles draw from the same population, ${f}_{1}$ is the probability of IBD for two alleles drawn from different populations, ${\overline{t}}_{0}$ is the mean time to coalescent for two alleles drawn from the same population, and ${\overline{t}}_{1}$ is the mean time for two alleles drawn from different populations.
- Excoffier1992: Introduces AMOVA, an extension of Cockerham1969? and Cockerham1973? (also see Weir1984?, Long1986?) for the ANOVA of gene frequencies, to the case of molecular data. It works by reducing the molecular data to pairwise distance estimates, ideally trying to estimate the number of mutations separating every pair of haplotypes.l
- Michalakis1996?: Proofs Weir1984?'s $\hat{}{\theta}_{w}$ is identical to fixation index ${F}_{ST}$.
- IBD
- Heritability
- Yang2010c?: heritability estimation based on IBS sharing from population samples instead of family-based methods; better because shared environment events and dominance and epistatis effects are minimized

- Price2011?: heritability by IBD segment-sharing instead of IBS sharing
- Browning2013b?: IBD-based heritability picks up effects of rare variants (Zaitlen2013?), but misses deep coinheritance, and thus loses some precision.
- Mapping
- Purcell2007?: pairwise IBD mapping; cases have higher rates of IBD at a locus than controls

- See DetectingSelection for a bibliography of papers focusing on the detection of selection.

QuantitativeGeneticsChaps15?

MathStatMethodsforGeneticAnalysis?

Stat536Prep

AnalysisofHumanGeneticLinkage?

LikelihoodBayesianandMCMCMethodsinQuantitativeGenetics?

GeneticsandAnalysisofQuantitativeTraits

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