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29. CBrotherProcessingOutput
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31. PRRSVFieldRecombinationStudy
32. CBrotherMacintoshInstall
33. CBrotherWindowsInstall
34. CBrotherInstallation
35. CBrotherCommandFile
36. CBrotherRepresentativeData
37. CBrotherParentTree
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40. CBrotherPriorExpectedSplitCops
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42. CBrotherInitialIntegratedBranch
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44. CBrotherInitialHKYKappa
45. CBrotherManual
46. CBrotherInitializeMCMC
47. CBrotherCommandFileProposals
48. CBrotherCheckpointing
49. CBrotherReversibleJumpProbability
50. CBrotherCommandLine
51. CBrotherSameMorphologyProbability
52. CBrotherSplitAncestryTopology
53. CBrotherSameAncestryProbability
54. CBrotherTauUpdate
55. CBrotherSigmaMu
56. CBrotherSigmaAlpha
57. CBrotherWindowLength
58. CBrotherHKYKappaProposal
59. CBrotherSingleEventProbability
60. CBrotherMonophylyProbability
61. CBrotherTauDimPrior
62. CBrotherTopologyPrior
63. CBrotherPriorExpectedCops
64. CBrotherPriorExpectedParameterChangepoint
65. CBrotherClade
66. CBrotherNumberOfClades
67. CBrotherAllowAncientAncestry
68. CBrotherAllowSplitAncestryTrees
69. CBrotherChangePoints
70. CBrotherOutputTopologyList
71. CBrotherDebug
72. CBrotherStdoutDuringBurnin
73. CBrotherDecorateOutput
74. CBrotherStdoutStyle
75. CBrotherOutputStyle
76. CBrotherCmdfileErrors
77. CBrotherModel
78. CBrotherChangePointPrior
79. CBrotherEventTopologyPrior
80. CBrotherMonophylyTopologyPrior
81. CBrotherQueries
82. CBrotherGenotypes
83. CBrotherPriors
84. WorkedExamples
85. CBrotherIntraGenotypeTopologyChangePointPrior
86. CBrotherAncestryTopologyChangePointPrior
87. CBrotherSplitAncestryTopologyChangePointPrior
88. CBrotherTopologyChangePointPrior
89. CBrotherEvolutionaryParameterChangePointPrior
90. CBrotherUniformTopologyPrior
91. CBrotherTauPrior
92. CBrotherIntegratedBranchPrior
93. CBrotherHKYKappaPrior
94. CBrotherData
95. CBrotherCommandLineSubsample
96. CBrotherCommandLineBurnin
97. CBrotherCommandLineLength
98. CBrotherParentalTree
99. CBrotherRandom
100. CBrotherComputeLikelihood
101. CBrotherCommandLineContinue
102. CBrotherContinue
103. CBrotherBurnin
104. CBrotherSubsample
105. CBrotherLength
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