STAT536 : HW11Questions?

Referers: Fall2008 :: (Remote :: Orphans :: Tree )

Dorman Wiki
Dorman Lab Wiki
Q3
Is there any software can do the pairwise alignment and give the summary of transition and transversion percentage,respectively.  Thanks.

For solving this question only, the summary for the two sequences in question is given at end of Q3.
I basically use ncbi's blast bl2seq, and/or Clustal for pairwise alignment. There are other MSA software/servers available. I don't know how detailed the alignment report would be. -XK
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